Here we introduce confirmed examples of Mass++ utilization.


Citations of Mass++ paper

Currently, the following paper is published for Mass++; the Impact Factor is cited from the Journal Citation Report.


Tanaka, S.(*), Fujita, Y., Parry, H.E., Yoshizawa, A.C., Morimoto, K., Murase, M., Yamada, Y., Yao, J., Utsunomiya, S., Kajihara, S., Fukuda, M., Ikawa, M., Tabata, T., Takahashi, K., Aoshima, K., Nihei, Y., Nishioka, T., Oda, Y., and Tanaka, K.

Mass++: A visualization and analysis tool for mass spectrometry
Journal of Proteome Research, 13: 3846–3853 (2014)
[PMID: 24965016] [doi: 10.1021/pr500155z(Impact factor(’13): 5.001)


Papers cited this paper are as follows (continuously-updated):

(Examined on July 13, 2018)


  1. Luo, Y., Javed, M.A., Deneer, H., Chen, X.
    Nutrient depletion-induced production of tri-acylated glycerophospholipids in Acinetobacter radioresistens
    Scientific Reports, 8:7470 (2018)
    [PMID: 29748546] [doi: 10.1038/s41598-018-25869-9(Impact factor(’17): 4.122)
  2. Sato, K., Yamashita, T., Ohuchi, H., Takeuchi, A., Gotoh, H., Ono, K., Mizuno, M., Mizutani, Y., Tomonari, S., Sakai, K., Imamoto, Y., Wada, A., Shichida, Y.
    Opn5L1 is a retinal receptor that behaves as a reverse and self-regenerating photoreceptor
    Nature Communications, 9: 1255 (2018)
    [PMID: 29593298] [doi: 10.1038/s41467-018-03603-3] (Impact Factor(’17): 12.353)
  3. Nakamura, A., Kaneko, N., Villemagne, V.L., Kato, T., Doecke, J., Dore, V., Fowler, C., Li, Q.X., Martins, R., Rowe, C., Tomita, T., Matsuzaki, K., Ishii, K., Ishii, K, Arahata, Y, Iwamoto, S., Ito, K., Tanaka, K., Masters, C.L., Yanagisawa, K.
    High performance plasma amyloid-β biomarkers for Alzheimer’s disease
    Nature, 554: 249-254 (2018)
    [PMID: 29420472] [doi: 10.1038/nature25456(Impact factor(’17): 41.577)
  4. Luo, Y., Javed, M.A., Deneer, H.
    Comparative study on nutrient depletion-induced lipidome adaptations in Staphylococcus haemolyticus and Staphylococcus epidermidis
    Scientific Reports, 8:2356 (2018)
    [PMID: 29402937] [doi: 10.1038/s41598-018-20801-7(Impact factor(’17): 4.122)
  5. Ficarro, S.B., Alexander, W.M., Marto, J.A.
    mzStudio: A Dynamic Digital Canvas for User-Driven Interrogation of Mass Spectrometry Data
    Proteomes, 5: E20 (2017)
    [PMID: 28763045] [doi: 10.3390/proteomes5030020(No Impact factor indexed)
  6. Segundo, U.,Aldamiz-Echevarria, L., Lopez-Cuadrado, J., Buenestado, D., Andrade, F., Perez, T.A., Barrena, R., Perez-Yarza, E.G., Pikatza, J.M.
    Improvement of newborn screening using a fuzzy inference system
    Expert Systems with Applications, 78: 301-318 (2017)
    [doi: 10.1016/j.eswa.2017.02.022(Impact factor(’16): 3.928)
  7. Hu, H., Khatri, K., Zaia, J.
    Algorithms and design strategies towards automated glycoproteomics analysis
    Mass Spectrometry Reviews, 36: 475-498 (2017)
    [PMID: 26728195] [doi: 10.1002/mas.21487(Impact factor(’16): 9.373)
  8. Perez de Souza, L., Naake, T., Tohge, T., Fernie, A.R.
    From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics
    GigaScience, 6:1-20 (2017)
    [PMID: 28520864] [doi: 10.1093/gigascience/gix037(Impact factor(’16): 6.871)
  9. Rai, A., Saito, K., Yamazaki, M.
    Integrated omics analysis of specialized metabolism in medicinal plants
    Plant Journal, 90:764-787 (2017)
    [PMID: 28109168] [doi: 10.1111/tpj.13485(Impact factor(’16): 5.901)
  10. Roushangar, R., Mias, G.I.
    MathIOmica-MSViewer: a dynamic viewer for mass spectrometry files for Mathematica
    Journal of Mass Spectrometry, 52:315-318 (2017)
    [PMID: 28299837] [doi: 10.1002/jms.3928(Impact factor(’16): 2.381)
  11. Sarpe, V., Schriemer, D.C.
    Supporting metabolomics with adaptable software: design architectures for the end-user
    Current Opinion in Biotechnology, 43:110-117 (2017)
    [PMID: 27870998] [doi: 10.1016/j.copbio.2016.11.001(Impact factor(’16): 9.294)
  12. Atila, M., Katselis, G., Chumala, P., Luo, Y.
    Characterization of N-Succinylation of L-Lysylphosphatidylglycerol in Bacillus subtilis Using Tandem Mass Spectrometry
    Journal of The American Society for Mass Spectrometry, 27:1606-1613 (2016)
    [PMID: 27506207] [doi: 10.1007/s13361-016-1455-4] (Impact factor(’15): 3.031)
  13. Avtonomov, D.M., Raskind, A., Nesvizhskii, A.I.
    BatMass: a Java Software Platform for LC-MS Data Visualization in Proteomics and Metabolomics
    Journal of Proteome Research, 15:2500-2509 (2016)
    [PMID: 27306858] [doi: 10.1021/acs.jproteome.6b00021(Impact factor(’15): 4.173)
  14. Misra, B.B., van der Hooft, J.J.
    Updates in metabolomics tools and resources: 2014-2015
    Electrophoresis, 37:86-110 (2016)
    [PMID: 26464019] [doi: 10.1002/elps.201500417(Impact factor(’15): 2.482)
  15. Kasuga, K., Suga, T., Man,o N.
    Bioanalytical insights into mediator lipidomics
    Journal of Pharmaceutical and Biomedical Analysis, 113:151-62 (2015)
    [PMID: 25769667] [doi: 10.1016/j.jpba.2015.02.011(Impact factor(’14): 2.979)
  16. Morimoto, K., Nishikaze, T., Yoshizawa, A.C., Kajihara, S., Aoshima, K., Oda, Y., and Tanaka, K.
    GlycanAnalysis Plug-in: A database search tool for N-glycan structure using mass spectrometry
    Bioinformatics, 31: 2217-2219 (2015)
    [PMID: 25712693] [doi: 10.1093/bioinformatics/btv110(Impact factor(’14): 4.981)
  17. Suabjakyong, P., Saiki, R., Van Griensven, L.J., Higashi, K., Nishimura, K., Igarashi, K., Toida, T.
    Polyphenol extract from Phellinus igniarius protects against acrolein toxicity in vitro and provides protection in a mouse stroke model
    PLoS One, 10: e0122733 (2015)
    [PMID: 25811373] [doi: 10.1371/journal.pone.0122733(Impact factor(’14): 3.234)
  18. Yoshizawa, A.C., Fukuyama, Y., Kajihara, S., Kuyama, H., and Tanaka, K.
    Computational Survey of Sequence Specificity for Protein Terminal Tags Covering Nine Organisms and Its Application to Protein Identification
    Journal of Proteome Research, 14 (2): 756-767 (2015)
    [PMID: 25393771] [doi: 10.1021/pr500793h] ((’14): 4.245)
  19. Aoshima, K., Takahashi, K., Ikawa, M., Kimura, T., Fukuda, M., Tanaka, S.,  Parry, H.E., Fujita, Y., Yoshizawa, A.C., Utsunomiya, S., Kajihara, S., Tanaka, K., and Oda, Y.
    A simple peak detection and label-free quantitation algorithm for chromatography-mass spectrometry
    BMC Bioinformatics, 15: 376 (2014)
    [PMID: 25420746] [doi: 10.1186/s12859-014-0376-0(Impact factor(’13): 2.672)
  20. Yao, J., Utsunomiya, S., Kajihara, S., Tabata, T., Aoshima, K., Oda,Y., and Tanaka, K.
    Peptide Peak Detection for Low Resolution MALDI-TOF Mass Spectrometry
    Mass Spectrometry, 3: A0030 (2014)
    [doi: 10.5702/massspectrometry.A0030(No Impact factor indexed)